Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs373967912 chr7:29675871 TATAG/T 3.95E-13 119 38.13 46.27 6 KM Plot
THYM rs374576715 chr2:10945372 G/A 0.000213 119 42.33 38.33 62.72 KM Plot
THYM rs374937715 chr19:29297524 A/T 7.19E-6 114 48 32.33 22.9 KM Plot
THYM rs376925823 chr9:97098212 G/A 8.53E-5 118 41.77 42.73 17.03 KM Plot
THYM rs377246025 chr8:50125368 A/AT 1.07E-8 119 27.2 50.1 46.27 KM Plot
THYM rs377261830 chr20:29534360 C/T 7.56E-6 119 38.23 50.1 10.78 KM Plot
THYM rs377291271 chr3:52974851 GAAGTTAATTTTACCTGT/G 0.000223 119 42.9 23.75 25.63 KM Plot
THYM rs377452176 chr7:29746082 TAATAA/T 1.18E-12 114 37.63 50.1 6 KM Plot
THYM rs3796352 chr3:52913279 C/T 0.000172 119 42.82 23.8 25.63 KM Plot
THYM rs3798418 chr6:116891664 A/T 0.000122 118 35 42.9 37.95 KM Plot
THYM rs3803716 chr16:24802325 C/T 3.37E-6 119 48 30.03 31.37 KM Plot
THYM rs3813485 chr6:3270121 T/C 0 117 4.13 41.77 42.9 KM Plot
THYM rs3813486 chr6:3270105 C/T 0 119 4.13 44.3 38.23 KM Plot
THYM rs3813488 chr6:3270048 C/G 0 117 4.13 45.87 38.13 KM Plot
THYM rs3816593 chr2:30865175 C/G 1.91E-8 117 36.03 50.13 33.13 KM Plot